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scientific researcher (PhD candidate) (m/f/d) biomedical / bioinformatics in translational tumor immunology

Specialty
Hematology and oncology

Charite Kampagne Discovery 3
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Work time
part-time

Start date
ab sofort

Employment period
limited

Application deadline
12.10.2026

Deployment location Charité
Campus Virchow-Klinikum, Wedding

Jobcode
7975

Salary group
E13

 

Working at Charité

The Penter Lab is a young and dynamic research group focused on understanding the complex interactions between leukemia and the immune system in the context of allogeneic hematopoietic cell transplantation.

Our research centers on a fundamental question: how do T cells recognize and eliminate leukemia, and how do leukemic cells evolve to escape immune surveillance? We investigate the biology, dynamics, and antigen specificities of leukemia-directed T cells, as well as mechanisms of immune resistance, including clonal evolution and adaptation under immune pressure.

Our long-term goal is to translate these insights into novel cellular therapies and innovative tools to monitor and understand immune responses and immune resistance in patients with hematologic malignancies.

We address these questions directly in primary patient-derived blood and bone marrow samples. Our research combines experimental immunology with state-of-the-art single-cell immunogenomics and deep, independent computational data analysis. This integrated approach allows us to track individual immune cell clones, characterize their T-cell receptors and antigen specificities, and investigate how leukemia–immune cell interactions evolve over the course of disease and treatment.

Overview of the position

Throughout the work on your PhD project you will utilize immunogenomics tools to identify minor histocompatibility antigens (miHAs) in recipients of allogeneic stem cell transplantation and identify donor T cells that recognize these miHAs. In particular, you will:

  • Analyze germline whole-exome sequencing data of donor and recipient to identify minor histocompatibility antigens
  • Expand T cells from post-transplant peripheral blood or stem cell grafts that recognize miHAs
  • Characterize and track miHA-specific T cells using tetramer stainings, bulk TCR sequencing and single cell TCR sequencing
  • Reexpress and test miHA-specific T cells
  • Identify candidate miHA-specific TCRs for future clinical studies

What we are looking for

We are looking for a highly motivated PhD candidate with an interest in combining wet and dry lab immunogenomics methods to study dynamics, phenotypes and specificities of leukemia-directed T cells. Your profile:

  • Relevant background for the project (completed degree in biological sciences, biotechnology or bioinformatics) including experience in cell-based research and dry lab work
  • Independent programming skills in R, Python, shell, or similar languages in a UNIX environment
  • Strong interest in immunological and tumor genetic questions
  • High motivation to combine wet and dry lab approaches
  • Critical and independent working style with a desire to push current knowledge boundaries

Charité offers you

  • Work in a diverse and international research group with many national and international collaborations
  • Highly translational environment with direct access to patient samples
  • Enrollment at BSIO graduate school
  • Opportunities for active participation at international scientific conferences

Information regarding the position

  • Salary group E13 TVöD VKA-K. You can find all information on salary and the applicable collective agreement here
  • The position is to be filled on a part-time basis at 25.03 hours per week (65%)
  • Fixed-term for 36 months, as the position is tied to the project duration 
  • 30 days of paid vacation per year
  • The application period ends on: 12th October, 2026
  • Position ID: 7975

Application

 

Everyone is welcome at the Charité, regardless of age, religion, gender, gender identity, sexual orientation, nationality, disability, ethnic or social background. We are committed to equal opportunities and inclusion.

For data protection reasons, we only accept applications via our application portal. The contact details provided below are intended solely for inquiries.

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If you have questions, please contact:

PD Dr. med. Livius Penter

livius.penter@charite.de

More information

Data protection information

The Charité would like to point out that personal data is stored and processed at various locations at the Charité premises (e.g. specialty department, personnel representatives, HR department) as part of and for the purposes of the application process. Furthermore, the data may be transferred or processed within the group and to external bodies (e.g. authorities) to protect legitimate interests. By submitting your application, you agree to our data protection policy and terms of use for application procedures, which you can find here.

Additional information

Charité – Universitätsmedizin Berlin makes its personnel decisions based on suitability, ability and professional performance. The Charité aims to increase the proportion of women in management positions and therefore strongly encourages women to apply. Women with equivalent qualifications will be given priority within the scope of legal possibilities. Applications from people with a migration background who meet the recruitment requirements are expressly encouraged. Severely disabled applicants with equal qualifications will be given preference. A police good-conduct certificate, in some cases an extended good-conduct certificate, is required at the time of recruitment. Unfortunately, application documents can be returned only if a sufficiently stamped envelope is enclosed. Any incurred travel expenses cannot be reimbursed.